Use the provided PERL script (taken from http://projects.binf.ku.dk/pgardner/bralibase/bralibase1.html)
to compare a CT file returned by a method with the reference CT file.

For example, run:

perl compare_ct.pm ./TestSet_RFAM/RF00507_SARSCoV/RF00507_10seqs_dotknot_PW_1.ct ./TestSet_RFAM/RF00507_SARSCoV/RF00507_10seqs.ct

