DotKnot code archive
DotKnot_1.1.tar.gz
Done:
- several bug fixes
- speed-up
- show the best near-optimal pseudoknots
DotKnot_1.2.tar.gz
Done:
- several bug fixes
- prediction of kissing hairpins
- show the predicted global structure
DotKnot_1.2.1.tar.gz
Done:
- takes FASTA file with multiple sequences as input
DotKnot_1.3.tar.gz
Done:
- implemented dynamic programming algorithm to speed up recursive secondary
structure element search for pseudoknot/kissing hairpin candidates
- general cleaning up
DotKnot_1.3.1.tar.gz
Done:
- several bug fixes
- assign (hopefully) unique file name to each sequence to allow DotKnot to run in parallel
on local machine
- output CT file for global structure
DotKnot_1.3.2.tar.gz
Done:
- fixed wrong path to RNAfold