If you find DotKnot useful for your research, please cite:

  • J. Sperschneider and A. Datta.
    DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model.
    Nucleic Acids Research. 2010; 38(7): e103.
  • J. Sperschneider, A. Datta and M. J. Wise.
    Heuristic RNA pseudoknot prediction including intramolecular kissing hairpins.
    RNA. 2011; 17(1): 27-38.

  • Return to the DotKnot start page for submitting a sequence